PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500454.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25795.3 Da    PI: 7.3513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.3e-161151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i ++s+r  tf kR+ng++KK  E+S+LC++e++ +ifs++
  XP_004500454.1 11 ITSDSKRRGTFKKRKNGLIKKVDEISTLCGIEACAVIFSQN 51
                    889************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.96151IPR002100Transcription factor, MADS-box
CDDcd002661.22E-31285No hitNo description
SuperFamilySSF554558.24E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTRKKVNLAY ITSDSKRRGT FKKRKNGLIK KVDEISTLCG IEACAVIFSQ NDPEPEVWPS  60
PWGVQRVLSR FQRLPELEQS KKMLNQESFL KQRIQKAQEQ LKKQRNDNKS KEMTQLMFQC  120
LNAGQIFDNV TMNDLNDLSW LIDQNLKQIE RNIEGIQTGE VVQNVGETLN VGEQAHIQHA  180
QGLENNVDAM QRQQWPMDFP SNNIGDQVLS FEDVNNVPNG VLWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAYITSDSKRRGTFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500454.11e-165PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072UXE21e-118A0A072UXE2_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA11G33460.11e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-56AGAMOUS-like 80